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Author Topic: docear.sh crash in Ubuntu 14.04
raphael
Newbie
Posts: 4
Post docear.sh crash in Ubuntu 14.04
on: September 4, 2014, 22:36

With Ubuntu 14.04 and

java version "1.7.0_65"
OpenJDK Runtime Environment (IcedTea 2.5.1) (7u65-2.5.1-4ubuntu1~0.14.04.2)
OpenJDK 64-Bit Server VM (build 24.65-b04, mixed mode)

Running

./docear.sh

Produces

Knopflerfish OSGi framework, version 4.1.10
Copyright 2003-2009 Knopflerfish. All Rights Reserved.

See http://www.knopflerfish.org for more information.
Loading xargs file /home/rad/Desktop/docear-1.1.1.0_beta_build239/props.xargs
Loading xargs file /home/rad/Desktop/docear-1.1.1.0_beta_build239/init.xargs
Installed and started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/core/org.freeplane.core (id#1)
User properties not found, new file created
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.script (id#2)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.bugreport (id#3)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.latex (id#4)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.services (id#5)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.core (id#6)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.workspace (id#7)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.openmaps (id#8)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.formula (id#9)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.svg (id#10)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.pdfutilities (id#11)
Installed: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.bibtex (id#12)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.script (id#2)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.bugreport (id#3)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.latex (id#4)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.services (id#5)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.core (id#6)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.workspace (id#7)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.openmaps (id#8)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.formula (id#9)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.svg (id#10)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.pdfutilities (id#11)
Started: reference:file:/home/rad/Desktop/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.bibtex (id#12)
Sep 04, 2014 5:18:08 PM org.freeplane.core.util.LogUtils info
INFO: language resources for en found
java.lang.ExceptionInInitializerError
at org.freeplane.core.ui.AFreeplaneAction.<init>(AFreeplaneAction.java:85)
at org.freeplane.features.mode.MoveToRootAction.<init>(MoveToRootAction.java:34)
at org.freeplane.features.mode.Controller.<init>(Controller.java:71)
at org.freeplane.main.application.FreeplaneGUIStarter.createController(FreeplaneGUIStarter.java:126)
at org.freeplane.main.osgi.ActivatorImpl.startFramework(ActivatorImpl.java:178)
at org.freeplane.main.osgi.ActivatorImpl.start(ActivatorImpl.java:79)
at org.freeplane.main.osgi.Activator.start(Activator.java:36)
at org.knopflerfish.framework.BundleImpl.start0(BundleImpl.java:374)
at org.knopflerfish.framework.PermissionOps.callStart0(PermissionOps.java:215)
at org.knopflerfish.framework.BundleImpl.start(BundleImpl.java:321)
at org.knopflerfish.framework.StartLevelImpl.increaseStartLevel(StartLevelImpl.java:285)
at org.knopflerfish.framework.StartLevelImpl$1.run(StartLevelImpl.java:217)
at org.knopflerfish.framework.StartLevelImpl.run(StartLevelImpl.java:178)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.awt.HeadlessException
at sun.awt.HeadlessToolkit.getScreenSize(HeadlessToolkit.java:282)
at org.freeplane.core.ui.MenuBuilder.<clinit>(MenuBuilder.java:413)
... 14 more
## DEBUG: errors - FrameworkErrorEvent bundle #1
## DEBUG: errors - FrameworkErrorEvent throwable:
org.osgi.framework.BundleException: BundleActivator start failed
at org.knopflerfish.framework.BundleImpl.start0(BundleImpl.java:419)
at org.knopflerfish.framework.PermissionOps.callStart0(PermissionOps.java:215)
at org.knopflerfish.framework.BundleImpl.start(BundleImpl.java:321)
at org.knopflerfish.framework.StartLevelImpl.increaseStartLevel(StartLevelImpl.java:285)
at org.knopflerfish.framework.StartLevelImpl$1.run(StartLevelImpl.java:217)
at org.knopflerfish.framework.StartLevelImpl.run(StartLevelImpl.java:178)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.lang.ExceptionInInitializerError
at org.freeplane.core.ui.AFreeplaneAction.<init>(AFreeplaneAction.java:85)
at org.freeplane.features.mode.MoveToRootAction.<init>(MoveToRootAction.java:34)
at org.freeplane.features.mode.Controller.<init>(Controller.java:71)
at org.freeplane.main.application.FreeplaneGUIStarter.createController(FreeplaneGUIStarter.java:126)
at org.freeplane.main.osgi.ActivatorImpl.startFramework(ActivatorImpl.java:178)
at org.freeplane.main.osgi.ActivatorImpl.start(ActivatorImpl.java:79)
at org.freeplane.main.osgi.Activator.start(Activator.java:36)
at org.knopflerfish.framework.BundleImpl.start0(BundleImpl.java:374)
... 6 more
Caused by: java.awt.HeadlessException
at sun.awt.HeadlessToolkit.getScreenSize(HeadlessToolkit.java:282)
at org.freeplane.core.ui.MenuBuilder.<clinit>(MenuBuilder.java:413)
... 14 more
Nested bundle exception:
java.lang.ExceptionInInitializerError
at org.freeplane.core.ui.AFreeplaneAction.<init>(AFreeplaneAction.java:85)
at org.freeplane.features.mode.MoveToRootAction.<init>(MoveToRootAction.java:34)
at org.freeplane.features.mode.Controller.<init>(Controller.java:71)
at org.freeplane.main.application.FreeplaneGUIStarter.createController(FreeplaneGUIStarter.java:126)
at org.freeplane.main.osgi.ActivatorImpl.startFramework(ActivatorImpl.java:178)
at org.freeplane.main.osgi.ActivatorImpl.start(ActivatorImpl.java:79)
at org.freeplane.main.osgi.Activator.start(Activator.java:36)
at org.knopflerfish.framework.BundleImpl.start0(BundleImpl.java:374)
at org.knopflerfish.framework.PermissionOps.callStart0(PermissionOps.java:215)
at org.knopflerfish.framework.BundleImpl.start(BundleImpl.java:321)
at org.knopflerfish.framework.StartLevelImpl.increaseStartLevel(StartLevelImpl.java:285)
at org.knopflerfish.framework.StartLevelImpl$1.run(StartLevelImpl.java:217)
at org.knopflerfish.framework.StartLevelImpl.run(StartLevelImpl.java:178)
at java.lang.Thread.run(Thread.java:745)
Caused by: java.awt.HeadlessException
at sun.awt.HeadlessToolkit.getScreenSize(HeadlessToolkit.java:282)
at org.freeplane.core.ui.MenuBuilder.<clinit>(MenuBuilder.java:413)
... 14 more
Framework launched

Thank you for your feedback. Please note that we - the Docear team - currently do not have the time to answer support questions. However, we encourage all Docear users to help each other.

Stefan-
[Docear]
Administrator
Posts: 969
Post Re: docear.sh crash in Ubuntu 14.04
on: September 16, 2014, 15:50

Hello Raphael,

this looks like a bug in Docear's mind mapping core "Freeplane", but we have never experienced this issue (on no operating system) and you are the first one to report it.

Have you somehow tried to modify your Docear installation? If not, it's probably best to ask the Freplane developers about this issue. You can find their project page at: http://sourceforge.net/p/freeplane

Best regards,
Stefan

Stefan Langer
Product Management & Research
Docear - The Academic Literature Suite
http://docear.org

Facebook: https://www.facebook.com/pages/Docear/137985949605902
Google+: https://plus.google.com/106965732112113749959/posts
Twitter: https://twitter.com/Docear_org

raphael
Newbie
Posts: 4
Post Re: docear.sh crash in Ubuntu 14.04
on: November 10, 2014, 15:13

Hi Stefan,

I tried again with version 1.1.0.1 and got the same error.

I'll head over to freeplane as well.

Thanks,

-Raphael

raphael
Newbie
Posts: 4
Post Re: docear.sh crash in Ubuntu 14.04
on: November 10, 2014, 19:25

[ur=https://sourceforge.net/p/freeplane/bugs/2199/]Freeplane ticket[/url]

Joeran-
[Docear]
Administrator
Posts: 646
Post Re: docear.sh crash in Ubuntu 14.04
on: November 12, 2014, 16:29

thx for the url

raphael
Newbie
Posts: 4
Post Re: docear.sh crash in Ubuntu 14.04
on: November 19, 2014, 16:06

So the problem is with Ubuntu not coming pre-loaded with the graphics part of the jdk. Running

sudo apt-get install openjdk-7-jdk

Got everything working nicely. Guess it'd be nice to put as a small warning in the install instructions?

Joeran-
[Docear]
Administrator
Posts: 646
Post Re: docear.sh crash in Ubuntu 14.04
on: December 2, 2014, 19:24

i placed a link in the FAQ

http://www.docear.org/faqs/what-should-i-know-when-using-docear-on-a-linux-system/

Xiaodong-
Qi
Beginner
Posts: 26
Post Re: docear.sh crash in Ubuntu 14.04
on: January 14, 2015, 18:50

Hi there,

I encounter a problem that the Docear cannot be started in my Ubuntu 12.04 system, the java core program just used up my CPU power without moving on. I suspect this problem may be related to the fact that I am using Docear on a dual system (windows 7 & Ubuntu), and shared all the data files across the systems. However, I don't know exactly how to make the docear work in my Ubuntu system, and I am sure it was working somedays before. But at least since version 1.1.0 of docear, this problem showed up. I am using Docear 1.1.1-beta now. Below is the log, hope you guys can help out. Thanks in advance.

$ ./docear.sh
Knopflerfish OSGi framework, version 4.1.10
Copyright 2003-2009 Knopflerfish. All Rights Reserved.

See http://www.knopflerfish.org for more information.
Loading xargs file /home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/props.xargs
Loading xargs file /home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/init.xargs
Installed and started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/core/org.freeplane.core (id#1)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.services (id#2)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.openmaps (id#3)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.workspace (id#4)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.bibtex (id#5)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.svg (id#6)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.core (id#7)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.bugreport (id#8)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.pdfutilities (id#9)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.formula (id#10)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.latex (id#11)
Installed: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.script (id#12)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.services (id#2)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.openmaps (id#3)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.workspace (id#4)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.bibtex (id#5)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.svg (id#6)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.core (id#7)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.bugreport (id#8)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.pdfutilities (id#9)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.formula (id#10)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.latex (id#11)
Started: reference:file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.freeplane.plugin.script (id#12)
Jan 14, 2015 10:35:53 AM org.freeplane.core.util.LogUtils info
INFO: language resources for en found
Jan 14, 2015 10:35:53 AM org.freeplane.core.util.LogUtils info
INFO: freeplane_version = 1.3.2 alpha; freeplane_xml_version = freeplane 1.3.0
git revision = f31d9ab_StefanLanger_2014-07-081419150200
java_version = 1.6.0_33; os_name = Linux; os_version = 3.13.0-44-generic
Jan 14, 2015 10:35:56 AM org.freeplane.core.util.LogUtils info
INFO: added parsing support for standard date format M/d/yy
Jan 14, 2015 10:35:56 AM org.freeplane.core.util.LogUtils info
INFO: added parsing support for standard date time format M/d/yy h:mm a
Jan 14, 2015 10:35:59 AM org.freeplane.core.util.LogUtils info
INFO: Workspace controller installed.
Jan 14, 2015 10:35:59 AM org.freeplane.core.util.LogUtils info
INFO: org.docear.plugin.core.CoreConfiguration() initializing...
Jan 14, 2015 10:35:59 AM org.freeplane.core.util.LogUtils info
INFO: Docear version: 1.1.1.0 beta build 239
Jan 14, 2015 10:35:59 AM org.freeplane.core.util.LogUtils info
INFO: OS version: Linux 3.13.0-44-generic amd64
Jan 14, 2015 10:35:59 AM org.freeplane.core.util.LogUtils info
INFO: Loaded properties from bundle://7.0:0/org/docear/plugin/core/defaults.properties
Jan 14, 2015 10:35:59 AM org.freeplane.core.util.LogUtils info
INFO: Docear Core controller extension initiated.
Jan 14, 2015 10:35:59 AM org.freeplane.core.util.LogUtils info
INFO: Docear Services controller extension initiated.
Jan 14, 2015 10:36:00 AM org.freeplane.core.util.LogUtils info
INFO: Loaded properties from bundle://2.0:0/org/docear/plugin/services/defaults.properties
Jan 14, 2015 10:36:00 AM org.freeplane.core.util.LogUtils info
INFO: Docear Service feature installed: org.docear.plugin.services.features.user.workspace.DocearWorkspaceSettings
Jan 14, 2015 10:36:01 AM org.freeplane.core.util.LogUtils info
INFO: Docear Service feature installed: org.docear.plugin.services.features.io.DocearConnectionProvider
Jan 14, 2015 10:36:01 AM org.freeplane.core.util.LogUtils info
INFO: Docear Service feature installed: org.docear.plugin.services.features.user.DocearUserController
Jan 14, 2015 10:36:01 AM org.freeplane.core.util.LogUtils info
INFO: Docear Service feature installed: org.docear.plugin.services.features.payment.DocearPaymentController
Jan 14, 2015 10:36:01 AM org.freeplane.core.util.LogUtils info
INFO: Docear Service feature installed: org.docear.plugin.services.features.upload.UploadController
Jan 14, 2015 10:36:01 AM org.freeplane.core.util.LogUtils info
INFO: Docear Upload-Thread starting...
Jan 14, 2015 10:36:02 AM org.freeplane.core.util.LogUtils info
INFO: Docear Upload-Thread started.
Jan 14, 2015 10:36:02 AM org.freeplane.core.util.LogUtils info
INFO: Docear Service Upload-Packer-Thread starting...
Jan 14, 2015 10:36:02 AM org.freeplane.core.util.LogUtils info
INFO: Docear Service feature installed: org.docear.plugin.services.features.documentretrieval.recommendations.RecommendationsController
Jan 14, 2015 10:36:02 AM org.freeplane.core.util.LogUtils info
INFO: Docear Service feature installed: org.docear.plugin.services.features.update.UpdateCheck
Jan 14, 2015 10:36:02 AM org.freeplane.core.util.LogUtils info
INFO: starting DocearPdfUtilitiesStarter(ModeController)...
Jan 14, 2015 10:36:02 AM org.freeplane.core.util.LogUtils info
INFO: Loaded properties from bundle://9.0:1/org/docear/plugin/pdfutilities/defaults.properties
Jan 14, 2015 10:36:03 AM org.freeplane.core.util.LogUtils info
INFO: checking pdf reader settings ...
Jan 14, 2015 10:36:04 AM org.freeplane.core.util.LogUtils info
INFO: starting DocearReferencesController(ModeController)
Jan 14, 2015 10:36:04 AM org.freeplane.core.util.LogUtils info
INFO: Loaded properties from bundle://5.0:0/org/docear/plugin/bibtex/defaults.properties
Jan 14, 2015 10:36:05 AM net.sf.jabref.plugin.PluginCore initialize
INFO: Found 2 plugin(s):
- net.sf.jabref.core (file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.bibtex/lib/lib/plugins/net.sf.jabref.core/plugin.xml)
- net.sf.jabref.export.misq (file:/home/qxd/Programs/Docear/docear-1.1.1.0_beta_build239/plugins/org.docear.plugin.bibtex/lib/lib/plugins/net.sf.jabref.export.misq/plugin.xml)

Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: class org.freeplane.plugin.workspace.WorkspaceController.addAction(): action workspace.action.project.new not added! (action workspace.action.project.new already registered)
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: class org.freeplane.plugin.workspace.WorkspaceController.addAction(): action workspace.action.project.import not added! (action workspace.action.project.import already registered)
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: class org.freeplane.plugin.workspace.WorkspaceController.addAction(): action workspace.action.node.open.location not added! (action workspace.action.node.open.location already registered)
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: project 13FA727FDA42AATC45LPZ5G3LUB2K3USM83Q loaded in: 2
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/F/Research/Works/NanofiberTrappedAtoms/_data/13FC4537326EZB47QBPCIXHCF0MWAT1OPV0V/default_files/incoming.mm
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/F/Research/Works/NanofiberTrappedAtoms/_data/13FC4537326EZB47QBPCIXHCF0MWAT1OPV0V/default_files/literature_and_annotations.mm
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/F/Research/Works/NanofiberTrappedAtoms/_data/13FC4537326EZB47QBPCIXHCF0MWAT1OPV0V/default_files/temp.mm
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/F/Research/Works/NanofiberTrappedAtoms/_data/13FC4537326EZB47QBPCIXHCF0MWAT1OPV0V/default_files/trash.mm
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/F/Research/Works/NanofiberTrappedAtoms/_data/13FC4537326EZB47QBPCIXHCF0MWAT1OPV0V/default_files/NanofiberTrappedAtoms.mm
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/F/Research/Works/NanofiberTrappedAtoms/_data/13FC4537326EZB47QBPCIXHCF0MWAT1OPV0V/default_files/OldLiterature.mm
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/F/Research/Works/NanofiberTrappedAtoms/_data/13FC4537326EZB47QBPCIXHCF0MWAT1OPV0V/default_files/QuantumToolsDevelopment.mm
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: [org.freeplane.plugin.workspace.creator.FolderFileNodeCreator] addFileType: directory_handle
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: [org.freeplane.plugin.workspace.creator.DefaultFileNodeCreator] addFileType: default_handle
Jan 14, 2015 10:36:08 AM org.freeplane.core.util.LogUtils info
INFO: project NanofiberTrappedAtoms loaded in: 509
Jan 14, 2015 10:36:09 AM org.freeplane.core.util.LogUtils info
INFO: Opening References: '/media/F/References/Archive/Archive.bib'

STDOUT: class org.docear.plugin.bibtex.jabref.DocearTransformForeignDatabaseAction time: 295ms
STDOUT: class org.docear.plugin.bibtex.actions.FilePathValidatorAction time: 336msJan 14, 2015 10:36:17 AM org.freeplane.core.util.LogUtils info
INFO: Opened database '/media/F/References/Archive/Archive.bib' with 1972 entries.
Jan 14, 2015 10:36:17 AM org.freeplane.core.util.LogUtils info
INFO: database /media/F/References/Archive/Archive.bib loaded in: 8549
Jan 14, 2015 10:36:17 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Documents/User/晓东的文档/_data/1405109B78BTABUH8W555STR3QCROE7W27I/default_files/incoming.mm
Jan 14, 2015 10:36:17 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Documents/User/晓东的文档/_data/1405109B78BTABUH8W555STR3QCROE7W27I/default_files/literature_and_annotations.mm
Jan 14, 2015 10:36:17 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Documents/User/晓东的文档/_data/1405109B78BTABUH8W555STR3QCROE7W27I/default_files/temp.mm
Jan 14, 2015 10:36:17 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Documents/User/晓东的文档/_data/1405109B78BTABUH8W555STR3QCROE7W27I/default_files/trash.mm
Jan 14, 2015 10:36:18 AM org.freeplane.core.util.LogUtils info
INFO: project General loaded in: 1173
Jan 14, 2015 10:36:19 AM org.freeplane.core.util.LogUtils info
INFO: Opening References: '/media/D/Documents/User/晓东的文档/_data/1405109B78BTABUH8W555STR3QCROE7W27I/default_files/General.bib'

STDOUT: class org.docear.plugin.bibtex.jabref.DocearTransformForeignDatabaseAction time: 0ms
STDOUT: class org.docear.plugin.bibtex.actions.FilePathValidatorAction time: 0msJan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: Opened database '/media/D/Documents/User/晓东的文档/_data/1405109B78BTABUH8W555STR3QCROE7W27I/default_files/General.bib' with 0 entries.
Jan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: database /media/D/Documents/User/晓东的文档/_data/1405109B78BTABUH8W555STR3QCROE7W27I/default_files/General.bib loaded in: 197
Jan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Courses/_data/141D3C46B5B4Q71K7A1X8NSJPZK7HAVO7DLF/default_files/literature_and_annotations.mm
Jan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Courses/_data/141D3C46B5B4Q71K7A1X8NSJPZK7HAVO7DLF/default_files/temp.mm
Jan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Courses/_data/141D3C46B5B4Q71K7A1X8NSJPZK7HAVO7DLF/default_files/trash.mm
Jan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Courses/_data/141D3C46B5B4Q71K7A1X8NSJPZK7HAVO7DLF/default_files/AI.mm
Jan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Courses/_data/141D3C46B5B4Q71K7A1X8NSJPZK7HAVO7DLF/default_files/SpecialFunctions.mm
Jan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Courses/_data/141D3C46B5B4Q71K7A1X8NSJPZK7HAVO7DLF/default_files/QuantumOptics.mm
Jan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Courses/_data/141D3C46B5B4Q71K7A1X8NSJPZK7HAVO7DLF/default_files/MachineLearning.mm
Jan 14, 2015 10:36:20 AM org.freeplane.core.util.LogUtils info
INFO: DOCEAR: adding new mindmap to library: file:/media/D/Courses/_data/141D3C46B5B4Q71K7A1X8NSJPZK7HAVO7DLF/default_files/EM.mm
Jan 14, 2015 10:36:21 AM org.freeplane.core.util.LogUtils info
INFO: project LearningCources loaded in: 954

STDERR: java.lang.NullPointerException: Null child not allowed
STDERR: at javax.swing.tree.TreePath.pathByAddingChild(TreePath.java:276)
STDERR: at javax.swing.tree.VariableHeightLayoutCache$TreeStateNode.setParent(VariableHeightLayoutCache.java:1064)
STDERR: at javax.swing.tree.DefaultMutableTreeNode.insert(DefaultMutableTreeNode.java:191)
STDERR: at javax.swing.tree.DefaultMutableTreeNode.add(DefaultMutableTreeNode.java:414)
STDERR: at javax.swing.tree.VariableHeightLayoutCache$TreeStateNode.expand(VariableHeightLayoutCache.java:1494)
STDERR: at javax.swing.tree.VariableHeightLayoutCache$TreeStateNode.expand(VariableHeightLayoutCache.java:1287)
STDERR: at javax.swing.tree.VariableHeightLayoutCache.rebuild(VariableHeightLayoutCache.java:742)
STDERR: at javax.swing.tree.VariableHeightLayoutCache.setModel(VariableHeightLayoutCache.java:108)
STDERR: at javax.swing.plaf.basic.BasicTreeUI.setModel(BasicTreeUI.java:410)
STDERR: at javax.swing.plaf.basic.BasicTreeUI$Handler.propertyChange(BasicTreeUI.java:3364)
STDERR: at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:298)
STDERR: at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:291)
STDERR: at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:229)
STDERR: at java.awt.Component.firePropertyChange(Component.java:8168)
STDERR: at javax.swing.JTree.setModel(JTree.java:868)
STDERR: at org.freeplane.plugin.workspace.components.TreeView.setModel(TreeView.java:230)
STDERR: at org.freeplane.plugin.workspace.mindmapmode.MModeWorkspaceController.setupView(MModeWorkspaceController.java:292)
STDERR: at org.freeplane.plugin.workspace.mindmapmode.MModeWorkspaceController.start(MModeWorkspaceController.java:114)
STDERR: at org.freeplane.plugin.workspace.WorkspaceController.startModeExtension(WorkspaceController.java:217)
STDERR: at org.freeplane.plugin.workspace.Activator$2.installExtension(Activator.java:46)
STDERR: at org.freeplane.main.osgi.ActivatorImpl.startFramework(ActivatorImpl.java:208)
STDERR: at org.freeplane.main.osgi.ActivatorImpl.start(ActivatorImpl.java:79)
STDERR: at org.freeplane.main.osgi.Activator.start(Activator.java:36)
STDERR: at org.knopflerfish.framework.BundleImpl.start0(BundleImpl.java:374)
STDERR: at org.knopflerfish.framework.PermissionOps.callStart0(PermissionOps.java:215)
STDERR: at org.knopflerfish.framework.BundleImpl.start(BundleImpl.java:321)
STDERR: at org.knopflerfish.framework.StartLevelImpl.increaseStartLevel(StartLevelImpl.java:285)
STDERR: at org.knopflerfish.framework.StartLevelImpl$1.run(StartLevelImpl.java:217)
STDERR: at org.knopflerfish.framework.StartLevelImpl.run(StartLevelImpl.java:178)
STDERR: at java.lang.Thread.run(Thread.java:701)Jan 14, 2015 10:36:21 AM org.freeplane.core.util.LogUtils severe
SEVERE: Excepton in java.io.FileInputStream.open line -2: /F:/References/Archive/Archive.bib (No such file or directory)
Jan 14, 2015 10:36:21 AM org.freeplane.core.util.LogUtils info
INFO: database /F:/References/Archive/Archive.bib loaded in: 14

STDOUT: ## DEBUG: errors - FrameworkErrorEvent bundle #1
STDOUT: ## DEBUG: errors - FrameworkErrorEvent throwable:
STDERR: org.osgi.framework.BundleException: BundleActivator start failed
STDERR: at org.knopflerfish.framework.BundleImpl.start0(BundleImpl.java:419)
STDERR: at org.knopflerfish.framework.PermissionOps.callStart0(PermissionOps.java:215)
STDERR: at org.knopflerfish.framework.BundleImpl.start(BundleImpl.java:321)
STDERR: at org.knopflerfish.framework.StartLevelImpl.increaseStartLevel(StartLevelImpl.java:285)
STDERR: at org.knopflerfish.framework.StartLevelImpl$1.run(StartLevelImpl.java:217)
STDERR: at org.knopflerfish.framework.StartLevelImpl.run(StartLevelImpl.java:178)
STDERR: at java.lang.Thread.run(Thread.java:701)
STDERR: Caused by: java.lang.NullPointerException: Null child not allowed
STDERR: at javax.swing.tree.TreePath.pathByAddingChild(TreePath.java:276)
STDERR: at javax.swing.tree.VariableHeightLayoutCache$TreeStateNode.setParent(VariableHeightLayoutCache.java:1064)
STDERR: at javax.swing.tree.DefaultMutableTreeNode.insert(DefaultMutableTreeNode.java:191)
STDERR: at javax.swing.tree.DefaultMutableTreeNode.add(DefaultMutableTreeNode.java:414)
STDERR: at javax.swing.tree.VariableHeightLayoutCache$TreeStateNode.expand(VariableHeightLayoutCache.java:1494)
STDERR: at javax.swing.tree.VariableHeightLayoutCache$TreeStateNode.expand(VariableHeightLayoutCache.java:1287)
STDERR: at javax.swing.tree.VariableHeightLayoutCache.rebuild(VariableHeightLayoutCache.java:742)
STDERR: at javax.swing.tree.VariableHeightLayoutCache.setModel(VariableHeightLayoutCache.java:108)
STDERR: at javax.swing.plaf.basic.BasicTreeUI.setModel(BasicTreeUI.java:410)
STDERR: at javax.swing.plaf.basic.BasicTreeUI$Handler.propertyChange(BasicTreeUI.java:3364)
STDERR: at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:298)
STDERR: at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:291)
STDERR: at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:229)
STDERR: at java.awt.Component.firePropertyChange(Component.java:8168)
STDERR: at javax.swing.JTree.setModel(JTree.java:868)
STDERR: at org.freeplane.plugin.workspace.components.TreeView.setModel(TreeView.java:230)
STDERR: at org.freeplane.plugin.workspace.mindmapmode.MModeWorkspaceController.setupView(MModeWorkspaceController.java:292)
STDERR: at org.freeplane.plugin.workspace.mindmapmode.MModeWorkspaceController.start(MModeWorkspaceController.java:114)
STDERR: at org.freeplane.plugin.workspace.WorkspaceController.startModeExtension(WorkspaceController.java:217)
STDERR: at org.freeplane.plugin.workspace.Activator$2.installExtension(Activator.java:46)
STDERR: at org.freeplane.main.osgi.ActivatorImpl.startFramework(ActivatorImpl.java:208)
STDERR: at org.freeplane.main.osgi.ActivatorImpl.start(ActivatorImpl.java:79)
STDERR: at org.freeplane.main.osgi.Activator.start(Activator.java:36)
STDERR: at org.knopflerfish.framework.BundleImpl.start0(BundleImpl.java:374)
STDERR: ... 6 more
STDOUT: Nested bundle exception:
STDERR: java.lang.NullPointerException: Null child not allowed
STDERR: at javax.swing.tree.TreePath.pathByAddingChild(TreePath.java:276)
STDERR: at javax.swing.tree.VariableHeightLayoutCache$TreeStateNode.setParent(VariableHeightLayoutCache.java:1064)
STDERR: at javax.swing.tree.DefaultMutableTreeNode.insert(DefaultMutableTreeNode.java:191)
STDERR: at javax.swing.tree.DefaultMutableTreeNode.add(DefaultMutableTreeNode.java:414)
STDERR: at javax.swing.tree.VariableHeightLayoutCache$TreeStateNode.expand(VariableHeightLayoutCache.java:1494)
STDERR: at javax.swing.tree.VariableHeightLayoutCache$TreeStateNode.expand(VariableHeightLayoutCache.java:1287)
STDERR: at javax.swing.tree.VariableHeightLayoutCache.rebuild(VariableHeightLayoutCache.java:742)
STDERR: at javax.swing.tree.VariableHeightLayoutCache.setModel(VariableHeightLayoutCache.java:108)
STDERR: at javax.swing.plaf.basic.BasicTreeUI.setModel(BasicTreeUI.java:410)
STDERR: at javax.swing.plaf.basic.BasicTreeUI$Handler.propertyChange(BasicTreeUI.java:3364)
STDERR: at java.beans.PropertyChangeSupport.fire(PropertyChangeSupport.java:298)
STDERR: at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:291)
STDERR: at java.beans.PropertyChangeSupport.firePropertyChange(PropertyChangeSupport.java:229)
STDERR: at java.awt.Component.firePropertyChange(Component.java:8168)
STDERR: at javax.swing.JTree.setModel(JTree.java:868)
STDERR: at org.freeplane.plugin.workspace.components.TreeView.setModel(TreeView.java:230)
STDERR: at org.freeplane.plugin.workspace.mindmapmode.MModeWorkspaceController.setupView(MModeWorkspaceController.java:292)
STDERR: at org.freeplane.plugin.workspace.mindmapmode.MModeWorkspaceController.start(MModeWorkspaceController.java:114)
STDERR: at org.freeplane.plugin.workspace.WorkspaceController.startModeExtension(WorkspaceController.java:217)
STDERR: at org.freeplane.plugin.workspace.Activator$2.installExtension(Activator.java:46)
STDERR: at org.freeplane.main.osgi.ActivatorImpl.startFramework(ActivatorImpl.java:208)
STDERR: at org.freeplane.main.osgi.ActivatorImpl.start(ActivatorImpl.java:79)
STDERR: at org.freeplane.main.osgi.Activator.start(Activator.java:36)
STDERR: at org.knopflerfish.framework.BundleImpl.start0(BundleImpl.java:374)
STDERR: at org.knopflerfish.framework.PermissionOps.callStart0(PermissionOps.java:215)
STDERR: at org.knopflerfish.framework.BundleImpl.start(BundleImpl.java:321)
STDERR: at org.knopflerfish.framework.StartLevelImpl.increaseStartLevel(StartLevelImpl.java:285)
STDERR: at org.knopflerfish.framework.StartLevelImpl$1.run(StartLevelImpl.java:217)
STDERR: at org.knopflerfish.framework.StartLevelImpl.run(StartLevelImpl.java:178)
STDERR: at java.lang.Thread.run(Thread.java:701)
STDOUT: Framework launched

Honigmelon-
e
Newbie
Posts: 1
Post Re: docear.sh crash in Ubuntu 14.04
on: October 7, 2016, 12:33

Hey,

just want to stop by and say that installing openjdk 8 with

sudo dnf install java-1.8.0-openjdk

resolved this issue for me on fedora 23.

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